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User Publications

Over 4400 publications cite the Network software and DNA Alignment software. The following list is a random selection (users are invited to email us their recent publications):

Go to start of: 2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000

2013 | Go to page top

Determining the cellular diversity of hepatitis C virus quasispecies by single-cell viral sequencing.
McWilliam Leitch EC, McLauchlan J.
J Virol. 2013 Dec;87(23):12648-55. doi: 10.1128/JVI.01602-13. Epub 2013 Sep 18.

Evolution of plant eukaryotic initiation factor 4E (eIF4E) and potyvirus genome-linked viral protein (VPg): A game of mirrors impacting resistance spectrum and durability.
Moury B, Charron C, Janzac B, Simon V, Gallois JL, Palloix A, Caranta C.
Infect Genet Evol. 2013 Dec 3. pii: S1567-1348(13)00440-1. doi: 10.1016/j.meegid.2013.11.024. [Epub ahead of print]

Different selective pressures shape the evolution of Toll-like receptors in human and African great ape populations.
Quach H, Wilson D, Laval G, Patin E, Manry J, Guibert J, Barreiro LB, Nerrienet E, Verschoor E, Gessain A, Przeworski M, Quintana-Murci L.
Hum Mol Genet. 2013 Dec 1;22(23):4829-40. doi: 10.1093/hmg/ddt335. Epub 2013 Jul 12.

Analysis of western lowland gorilla (Gorilla gorilla gorilla) specific Alu repeats.
McLain AT, Carman GW, Fullerton ML, Beckstrom TO, Gensler W, Meyer TJ, Faulk C, Batzer MA.
Mob DNA. 2013 Nov 22;4(1):26. doi: 10.1186/1759-8753-4-26.

Differentiation in neutral genes and a candidate gene in the pied flycatcher: using biological archives to track global climate change.
Kuhn K, Schwenk K, Both C, Canal D, Johansson US, van der Mije S, Töpfer T, Päckert M.
Ecol Evol. 2013 Nov;3(14):4799-814. doi: 10.1002/ece3.855. Epub 2013 Nov 1.

The influence of clan structure on the genetic variation in a single Ghanaian village.
Sanchez-Faddeev H, Pijpe J, van der Hulle T, Meij HJ, van der Gaag KJ, Slagboom PE, Westendorp RG, de Knijff P.
Eur J Hum Genet. 2013 Oct;21(10):1134-9. doi: 10.1038/ejhg.2013.12. Epub 2013 Feb 27.

Global Population Structure of the Genes Encoding the Malaria Vaccine Candidate, Plasmodium vivax Apical Membrane Antigen 1 (PvAMA1).
Arnott A, Mueller I, Ramsland PA, Siba PM, Reeder JC, Barry AE.
PLoS Negl Trop Dis. 2013 Oct 31;7(10):e2506. doi: 10.1371/journal.pntd.0002506.

Genetic recombination and Cryptosporidium hominis virulent subtype IbA10G2.
Li N, Xiao L, Cama VA, Ortega Y, Gilman RH, Guo M, Feng Y.
Emerg Infect Dis. 2013 Oct;19(10):1573-82. doi: 10.3201/eid1910.121361.

Molecular population genetics of the melanic plumage polymorphism in Arctic skuas (Stercorarius parasiticus): evidence for divergent selection on plumage colour.
Janssen K, Mundy NI.
Mol Ecol. 2013 Sep;22(18):4634-43. doi: 10.1111/mec.12428. Epub 2013 Aug 23.

Patterns of nucleotide and haplotype diversity at ICAM-1 across global human populations with varying levels of malaria exposure.
Gomez F, Tomas G, Ko WY, Ranciaro A, Froment A, Ibrahim M, Lema G, Nyambo TB, Omar SA, Wambebe C, Hirbo JB, Rocha J, Tishkoff SA.
Hum Genet. 2013 Sep;132(9):987-99. doi: 10.1007/s00439-013-1284-5. Epub 2013 Apr 23.

High connectivity across the fragmented chemosynthetic ecosystems of the deep Atlantic Equatorial Belt: efficient dispersal mechanisms or questionable endemism?
Teixeira S, Olu K, Decker C, Cunha RL, Fuchs S, Hourdez S, Serrão EA, Arnaud-Haond S.
Mol Ecol. 2013 Sep;22(18):4663-80. doi: 10.1111/mec.12419. Epub 2013 Aug 9.

Genetic evidence for a high diversity and wide distribution of endemic strains of the pathogenic chytrid fungus Batrachochytrium dendrobatidis in wild Asian amphibians.
Bataille A, Fong JJ, Cha M, Wogan GO, Baek HJ, Lee H, Min MS, Waldman B.
Mol Ecol. 2013 Aug;22(16):4196-209. doi: 10.1111/mec.12385. Epub 2013 Jun 27.

Genetic evidence of paleolithic colonization and neolithic expansion of modern humans on the tibetan plateau. Qi X, Cui C, Peng Y, Zhang X, Yang Z, Zhong H, Zhang H, Xiang K, Cao X, Wang Y, Ouzhuluobu, Basang, Ciwangsangbu,
Bianba, Gonggalanzi, Wu T, Chen H, Shi H, Su B.
Mol Biol Evol. 2013 Aug;30(8):1761-78. doi: 10.1093/molbev/mst093. Epub 2013 May 16.

The first peopling of South America: new evidence from Y-chromosome haplogroup Q.
Battaglia V, Grugni V, Perego UA, Angerhofer N, Gomez-Palmieri JE, Woodward SR, Achilli A, Myres N, Torroni A, Semino O.
PLoS One. 2013 Aug 21;8(8):e71390. doi: 10.1371/journal.pone.0071390.

Phylogeographic pattern and extensive mitochondrial DNA divergence disclose a species complex within the Chagas disease vector Triatoma dimidiata.
Monteiro FA, Peretolchina T, Lazoski C, Harris K, Dotson EM, Abad-Franch F, Tamayo E, Pennington PM, Monroy C, Cordon-Rosales C, Salazar-Schettino PM, Gómez-Palacio A, Grijalva MJ, Beard CB, Marcet PL.
PLoS One. 2013 Aug 5;8(8):e70974. doi: 10.1371/journal.pone.0070974. Print 2013.

Indian Ocean crossroads: human genetic origin and population structure in the Maldives.
Pijpe J, de Voogt A, van Oven M, Henneman P, van der Gaag KJ, Kayser M, de Knijff P.
Am J Phys Anthropol. 2013 May;151(1):58-67. doi: 10.1002/ajpa.22256. Epub 2013 Mar 21.

An African American paternal lineage adds an extremely ancient root to the human Y chromosome phylogenetic tree.
Mendez FL, Krahn T, Schrack B, Krahn AM, Veeramah KR, Woerner AE, Fomine FL, Bradman N, Thomas MG, Karafet TM, Hammer MF.
Am J Hum Genet. 2013 Mar 7;92(3):454-9. doi: 10.1016/j.ajhg.2013.02.002. Epub 2013 Feb 28.

Y-chromosome diversity in modern Bulgarians: new clues about their ancestry.
Karachanak S, Grugni V, Fornarino S, Nesheva D, Al-Zahery N, Battaglia V, Carossa V, Yordanov Y, Torroni A, Galabov AS, Toncheva D, Semino O.
PLoS One. 2013;8(3):e56779. doi: 10.1371/journal.pone.0056779. Epub 2013 Mar 6.

Historical collections reveal patterns of diffusion of sweet potato in Oceania obscured by modern plant movements and recombination.
Roullier C, Benoit L, McKey DB, Lebot V.
Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2205-10. doi: 10.1073/pnas.1211049110. Epub 2013 Jan 22.

A highly unstable recent mutation in human mtDNA.
Duggan AT, Stoneking M.
Am J Hum Genet. 2013 Feb 7;92(2):279-84. doi: 10.1016/j.ajhg.2012.12.004. Epub 2013 Jan 10.

2012 | Go to page top

Population Differentiation of Southern Indian Male Lineages Correlates with Agricultural Expansions Predating the Caste System.
Arunkumar G, Soria-Hernanz DF, Kavitha VJ, Arun VS, Syama A, Ashokan KS, Gandhirajan KT, Vijayakumar K, Narayanan M, Jayalakshmi M, Ziegle JS, Royyuru AK, Parida L, Wells RS, Renfrew C, Schurr TG, Smith CT, Platt DE, Pitchappan R; The Genographic Consortium.
PLoS One. 2012;7(11):e50269. Epub 2012 Nov 28.

Molecular Relationships and Classification of Several Tufted Capuchin Lineages ( Cebus apella , Cebus xanthosternos and Cebus nigritus , Cebidae), by Means of Mitochondrial Cytochrome Oxidase II Gene Sequences.
Ruiz-García M, Castillo MI, Lichilín-Ortiz N, Pinedo-Castro M.
Folia Primatol (Basel). 2012;83(2):100-25. doi: 10.1159/000342832. Epub 2012 Oct 30.

Characterization of cytochrome b diversity in Chinese domestic horses.
Yue XP, Qin F, Campana MG, Liu DH, Mao CC, Wang XB, Lan XY, Chen H, Lei CZ.
Anim Genet. 2012 Oct;43(5):624-6. doi: 10.1111/j.1365-2052.2011.02298.x. Epub 2011 Dec 21.

History of expansion and anthropogenic collapse in a top marine predator of the Black Sea estimated from genetic data.
Fontaine MC, Snirc A, Frantzis A, Koutrakis E, Oztürk B, Oztürk AA, Austerlitz F.
Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):E2569-76. Epub 2012 Sep 4.

Multilocus coalescence analyses support A mtDNA-based phylogeographic history for a widespread Palearctic passerine bird, Sitta europaea.
Hung CM, Drovetski SV, Zink RM.
Evolution. 2012 Sep;66(9):2850-64. doi: 10.1111/j.1558-5646.2012.01657.x. Epub 2012 Apr 29.

Emerging genetic patterns of the European Neolithic: perspectives from a late Neolithic Bell Beaker burial site in Germany.
Lee EJ, Makarewicz C, Renneberg R, Harder M, Krause-Kyora B, Müller S, Ostritz S, Fehren-Schmitz L, Schreiber S, Müller J, von Wurmb-Schwark N, Nebel A.
Am J Phys Anthropol. 2012 Aug;148(4):571-9. doi: 10.1002/ajpa.22074. Epub 2012 May 3.

Heavily male-biased long-distance dispersal of orang-utans (genus: Pongo), as revealed by Y-chromosomal and mitochondrial genetic markers.
Nietlisbach P, Arora N, Nater A, Goossens B, Van Schaik CP, Krützen M.
Mol Ecol. 2012 Jul;21(13):3173-86. doi: 10.1111/j.1365-294X.2012.05539.x. Epub 2012 Mar 30.

Phylogeographic analyses of Phragmites australis in China: Native distribution and habitat preference of the haplotype that invaded North America.
An JX, Wang Q, Yang J, Liu JQ.
Journal of Systematics and Evolution, July 2012; 50(4): 334-40.

Mitochondrial DNA analyses of the saltwater crocodile (Crocodylus porosus) from the Northern Territory of Australia.
Luck NL, Thomas KC, Morin-Adeline VE, Barwick S, Chong AY, Carpenter EL, Wan LX, Willet CE, Langford-Salisbury SM, Abdelsayd M, Ang RA, Atkinson SJ, Barcelo FG, Booth ME, Bradbury EJ, Branighan TL, Brown J, Castillo LE, Chandler ND, Chong JY, Collits KJ, Cook E, Cruz RE, Farrugia CA, Fletcher JL, Fletcher S, Gamaliel NS, Gurr JF, Hallett NJ, Hargreaves G, Harris T, Hollings S, Hopcroft RL, Johinke D, Kern PL, Kiddell JL, Kilby KE, Kragic B, Kwan JH, Lee JI, Liang JM, Lillie MC, Lui BC, Luk SW, Lun KH, Marshall KL, Marzec JA, Masters KT, Mazurkijevic LJ, Medlock J, Meoli C, Morris KM, Noh YH, Okazaki H, Orourke TJ, Payne EM, Powell DJ, Quinlivan AR, Reeves TJ, Robson K, Robson, KL, Royle LJ, Stevenson R, Sellens T, Sun ZC, Sutton AL, Swan A, Tang JM, Tinker JE, Tomlinson SC, Wilkin T, Wright AL, Xiao ST, Yang J, Yee C, Jaratlerdsiri W, Isberg SR, Miles L, Higgins D, Lane A, Gongora J.
Australian Journal of Zoology, July 2012; 60, 18-25.

Crohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variation.
Nakagome S, Mano S, Kozlowski L, Bujnicki JM, Shibata H, Fukumaki Y, Kidd JR, Kidd KK, Kawamura S, Oota H.
Mol Biol Evol. 2012 Jun;29(6):1569-85. doi: 10.1093/molbev/mss006. Epub 2012 Jan 12.

A trans-specific polymorphism in ZC3HAV1 is maintained by long-standing balancing selection and may confer susceptibility to multiple sclerosis.
Cagliani R, Guerini FR, Fumagalli M, Riva S, Agliardi C, Galimberti D, Pozzoli U, Goris A, Dubois B, Fenoglio C, Forni D, Sanna S, Zara I, Pitzalis M, Zoledziewska M, Cucca F, Marini F, Comi GP, Scarpini E, Bresolin N, Clerici M, Sironi M.
Mol Biol Evol. 2012 Jun;29(6):1599-613. doi: 10.1093/molbev/mss002. Epub 2012 Jan 6.

Gene flow among wild and domesticated almond species: insights from chloroplast and nuclear markers.
Delplancke M, Alvarez N, Espíndola, A, Joly H, Benoit L, Brouck E, Arrigo N.
Evolutionary Applications, June 2012; 5(4): 317-329

Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa.
Campbell MC, Ranciaro A, Froment A, Hirbo J, Omar S, Bodo JM, Nyambo T, Lema G, Zinshteyn D, Drayna D, Breslin PA, Tishkoff SA.
Mol Biol Evol. 2012 Apr;29(4):1141-53. doi: 10.1093/molbev/msr293. Epub 2011 Nov 29.

Patterns of ancestry, signatures of natural selection, and genetic association with stature in Western African pygmies.
Jarvis JP, Scheinfeldt LB, Soi S, Lambert C, Omberg L, Ferwerda B, Froment A, Bodo JM, Beggs W, Hoffman G, Mezey J, Tishkoff SA.
PLoS Genet. 2012;8(4):e1002641. doi: 10.1371/journal.pgen.1002641. Epub 2012 Apr 26.

Phylogenetic utility of structural alterations found in the chloroplast genome of pear: hypervariable regions in a highly conserved genome.
Katayama H, Tachibana M, Iketani H, Zhang SL, Uematsu C.
Tree Genetics & Genomes April 2012; 8(2):313-26

Globally diverse Toxoplasma gondii isolates comprise six major clades originating from a small number of distinct ancestral lineages.
Su C, Khan A, Zhou P, Majumdar D, Ajzenberg D, Dardé ML, Zhu XQ, Ajioka JW, Rosenthal BM, Dubey JP, Sibley LD.
Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):5844-9. doi: 10.1073/pnas.1203190109. Epub 2012 Mar 19.

Mesoamerican origin of the common bean (Phaseolus vulgaris L.) is revealed by sequence data.
Bitocchi E, Nanni L, Bellucci E, Rossi M, Giardini A, Zeuli PS, Logozzo G, Stougaard J, McClean P, Attene G, Papa R.
Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):E788-96. doi: 10.1073/pnas.1108973109. Epub 2012 Mar 5.

Molecular systematics and phylogeography of Cebus capucinus (Cebidae, Primates) in Colombia and Costa Rica by means of the mitochondrial COII gene.
Ruiz-Garcia M, Castillo MI, Ledezma A, Leguizamon N, Sánchez R, Chinchilla M, Gutierrez-Espeleta GA.
Am J Primatol. 2012 Apr;74(4):366-80. doi: 10.1002/ajp.20940. Epub 2011 Mar 31.

Genetic variation analysis of Mugil cephalus in China sea based on mitochondrial COI gene sequences.
Sun P, Shi ZH, Yin F, Peng SM.
Biochem Genet. 2012 Apr;50(3-4):180-91. doi: 10.1007/s10528-011-9460-6. Epub 2011 Sep 17.

Tracing the origin of Gulf Coast Phragmites (Poaceae): A story of long-distance dispersal and hybridization.
Lambertini C, Mendelssohn IA, Gustafsson MH, Olesen B, Riis T, Sorrell BK, Brix H.
Am J Bot. 2012 Mar;99(3):538-51. doi: 10.3732/ajb.1100396. Epub 2012 Feb 14.

High altitude adaptation in Daghestani populations from the Caucasus.
Pagani L, Ayub Q, MacArthur DG, Xue Y, Baillie JK, Chen Y, Kozarewa I, Turner DJ, Tofanelli S, Bulayeva K, Kidd K, Paoli G, Tyler-Smith C.
Hum Genet. 2012 Mar;131(3):423-33. doi: 10.1007/s00439-011-1084-8. Epub 2011 Sep 9.

Mitochondrial DNA and Y chromosome variation provides evidence for a recent common ancestry between Native Americans and Indigenous Altaians.
Dulik MC, Zhadanov SI, Osipova LP, Askapuli A, Gau L, Gokcumen O, Rubinstein S, Schurr TG.
Am J Hum Genet. 2012 Feb 10;90(2):229-46. doi: 10.1016/j.ajhg.2011.12.014. Epub 2012 Jan 25.

Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history.
Peters JL, Roberts TE, Winker K, McCracken KG.
PLoS One. 2012;7(2):e31972. doi: 10.1371/journal.pone.0031972. Epub 2012 Feb 22.

Mitochondrial haplotype analysis for differentiation of isolates of Phytophthora cinnamomi.
Martin FN, Coffey MD.
Phytopathology. 2012 Feb;102(2):229-39. doi: 10.1094/PHYTO-04-11-0115.

The origin of recently established red fox populations in the United States: translocations or natural range expansions?
Mark J. Statham, Benjamin N. Sacks, Keith B. Aubry, John D. Perrine, and Samantha M. Wisely.
Journal of Mammalogy. 2012 Feb; (93)1:52-65.

Bridging near and remote Oceania: mtDNA and NRY variation in the Solomon Islands.
Delfin F, Myles S, Choi Y, Hughes D, Illek R, van Oven M, Pakendorf B, Kayser M, Stoneking M.
Mol Biol Evol. 2012 Feb;29(2):545-64. doi: 10.1093/molbev/msr186. Epub 2011 Jul 18.

Evolutionary and functional evidence for positive selection at the human CD5 immune receptor gene.
Carnero-Montoro E, Bonet L, Engelken J, Bielig T, Martínez-Florensa M, Lozano F, Bosch E.
Mol Biol Evol. 2012 Feb;29(2):811-23. doi: 10.1093/molbev/msr251. Epub 2011 Oct 13.

Invasion genetics of the chestnut blight fungus Cryphonectria parasitica in Switzerland.
Prospero S, Rigling D.
Phytopathology. 2012 Jan;102(1):73-82. doi: 10.1094/PHYTO-02-11-0055.

Herders of Indian and European cattle share their predominant allele for lactase persistence.
Gallego Romero I, Basu Mallick C, Liebert A, Crivellaro F, Chaubey G, Itan Y, Metspalu M, Eaaswarkhanth M, Pitchappan R, Villems R, Reich D, Singh L, Thangaraj K, Thomas MG, Swallow DM, Mirazón Lahr M, Kivisild T.
Mol Biol Evol. 2012 Jan;29(1):249-60. doi: 10.1093/molbev/msr190. Epub 2011 Aug 11.

2011 | Go to page top

Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance.
Downing T, Imamura H, Decuypere S, Clark TG, Coombs GH, Cotton JA, Hilley JD, de Doncker S, Maes I, Mottram JC, Quail MA, Rijal S, Sanders M, Schönian G, Stark O, Sundar S, Vanaerschot M, Hertz-Fowler C, Dujardin JC, Berriman M.
Genome Res. 2011 Dec;21(12):2143-56. doi: 10.1101/gr.123430.111. Epub 2011 Oct 28.

Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the Indo-Pacific Barrier with contemporary overlap in The Coral Triangle.
Gaither MR, Bowen BW, Bordenave TR, Rocha LA, Newman SJ, Gomez JA, van Herwerden L, Craig MT.
BMC Evol Biol. 2011 Jul 1;11:189. doi: 10.1186/1471-2148-11-189.

Hundsdoerfer AK, Mende MB, Kitching IJ, Cordellier M.
Taxonomy, phylogeography and climate relations of the Western Palaearctic spurge hawkmoth (Lepidoptera, Sphingidae, Macroglossinae).
Zoologica Scripta, July 2011, 40: 403-417.

Virulence differences in Toxoplasma mediated by amplification of a family of polymorphic pseudokinases.
Behnke MS, Khan A, Wootton JC, Dubey JP, Tang K, Sibley LD.
Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9631-6. doi: 10.1073/pnas.1015338108. Epub 2011 May 17.

Variants in SNAP25 are targets of natural selection and influence verbal performances in women.
Cagliani R, Riva S, Marino C, Fumagalli M, D'Angelo MG, Riva V, Comi GP, Pozzoli U, Forni D, Cáceres M, Bresolin N, Clerici M, Sironi M.
Cell Mol Life Sci. 2012 May;69(10):1705-15. doi: 10.1007/s00018-011-0896-y. Epub 2011 Dec 23.

GWAS of follicular lymphoma reveals allelic heterogeneity at 6p21.32 and suggests shared genetic susceptibility with diffuse large B-cell lymphoma.
Smedby KE, Foo JN, Skibola CF, Darabi H, Conde L, Hjalgrim H, Kumar V, Chang ET, Rothman N, Cerhan JR, Brooks-Wilson AR, Rehnberg E, Irwan ID, Ryder LP, Brown PN, Bracci PM, Agana L, Riby J, Cozen W, Davis S, Hartge P, Morton LM, Severson RK, Wang SS, Slager SL, Fredericksen ZS, Novak AJ, Kay NE, Habermann TM, Armstrong B, Kricker A, Milliken S, Purdue MP, Vajdic CM, Boyle P, Lan Q, Zahm SH, Zhang Y, Zheng T, Leach S, Spinelli JJ, Smith MT, Chanock SJ, Padyukov L, Alfredsson L, Klareskog L, Glimelius B, Melbye M, Liu ET, Adami HO, Humphreys K, Liu J.
PLoS Genet. 2011 Apr;7(4):e1001378. doi: 10.1371/journal.pgen.1001378. Epub 2011 Apr 21.

Quantifying nonvertical inheritance in the evolution of Legionella pneumophila.
Coscollá M, Comas I, González-Candelas F.
Mol Biol Evol. 2011 Feb;28(2):985-1001. doi: 10.1093/molbev/msq278. Epub 2010 Oct 20.

Genetic variations in Tibetan populations and high-altitude adaptation at the Himalayas.
Peng Y, Yang Z, Zhang H, Cui C, Qi X, Luo X, Tao X, Wu T, Ouzhuluobu, Basang, Ciwangsangbu, Danzengduojie, Chen H, Shi H, Su B.
Mol Biol Evol. 2011 Feb;28(2):1075-81. doi: 10.1093/molbev/msq290. Epub 2010 Oct 28.

Insights into the demographic history of African Pygmies from complete mitochondrial genomes.
Batini C, Lopes J, Behar DM, Calafell F, Jorde LB, van der Veen L, Quintana-Murci L, Spedini G, Destro-Bisol G, Comas D.
Mol Biol Evol. 2011 Feb;28(2):1099-110. doi: 10.1093/molbev/msq294. Epub 2010 Nov 1.

Intraspecific morphological and genetic variability in Radix balthica (Linnaeus 1758) (Gastropoda: Basommatophora: Lymnaeidae) with morphological comparison to other European Radix species.
Schniebs K, Glöer P, Vinarski MV, Hundsdoerfer AK
Journal of Conchology; Feb 2011; 40(6):657-78

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups.
Kloss-Brandstätter A, Pacher D, Schönherr S, Weissensteiner H, Binna R, Specht G, Kronenberg F.
Hum Mutat. 2011 Jan;32(1):25-32. doi: 10.1002/humu.21382. Epub 2010 Nov 16.

Extended Y chromosome investigation suggests postglacial migrations of modern humans into East Asia via the northern route.
Zhong H, Shi H, Qi XB, Duan ZY, Tan PP, Jin L, Su B, Ma RZ.
Mol Biol Evol. 2011 Jan;28(1):717-27. doi: 10.1093/molbev/msq247. Epub 2010 Sep 13.

2010 | Go to page top

Effects of Pleistocene glaciations and rivers on the population structure of Bornean orangutans (Pongo pygmaeus).
Arora N, Nater A, van Schaik CP, Willems EP, van Noordwijk MA, Goossens B, Morf N, Bastian M, Knott C, Morrogh-Bernard H, Kuze N, Kanamori T, Pamungkas J, Perwitasari-Farajallah D, Verschoor E, Warren K, Krützen M.
Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21376-81. doi: 10.1073/pnas.1010169107. Epub 2010 Nov 22.

Splits or waves? Trees or webs? How divergence measures and network analysis can unravel language histories
Heggarty P, Maguire W, McMahon A.
Phil. Trans. R. Soc. B 12 December 2010; 365(1559):3829-43

Trypanosoma cruzi I genotypes in different geographical regions and transmission cycles based on a microsatellite motif of the intergenic spacer of spliced-leader genes.
Cura CI, Mejía-Jaramillo AM, Duffy T, Burgos JM, Rodriguero M, Cardinal MV, Kjos S, Gurgel-Gonçalves R, Blanchet D, De Pablos LM, Tomasini N, da Silva A, Russomando G, Cuba CA, Aznar C, Abate T, Levin MJ, Osuna A, Gürtler RE, Diosque P, Solari A, Triana-Chávez O, Schijman AG.
Int J Parasitol. 2010 Dec;40(14):1599-607. doi: 10.1016/j.ijpara.2010.06.006. Epub 2010 Jul 27.

Molecular phylogenetics and phylogeography of the white-fronted capuchin (Cebus albifrons; Cebidae, Primates) by means of mtCOII gene sequences.
Ruiz-García M, Castillo MI, Vásquez C, Rodriguez K, Pinedo-Castro M, Shostell J, Leguizamon N.
Mol Phylogenet Evol. 2010 Dec;57(3):1049-61. doi: 10.1016/j.ympev.2010.09.002. Epub 2010 Sep 18.

Genetic diversity at endoplasmic reticulum aminopeptidases is maintained by balancing selection and is associated with natural resistance to HIV-1 infection.
Cagliani R, Riva S, Biasin M, Fumagalli M, Pozzoli U, Lo Caputo S, Mazzotta F, Piacentini L, Bresolin N, Clerici M, Sironi M.
Hum Mol Genet. 2010 Dec 1;19(23):4705-14. doi: 10.1093/hmg/ddq401. Epub 2010 Sep 15.

Integrated genetic and epigenetic analysis identifies haplotype-specific methylation in the FTO type 2 diabetes and obesity susceptibility locus.
Bell CG, Finer S, Lindgren CM, Wilson GA, Rakyan VK, Teschendorff AE, Akan P, Stupka E, Down TA, Prokopenko I, Morison IM, Mill J, Pidsley R; International Type 2 Diabetes 1q Consortium, Deloukas P, Frayling TM, Hattersley AT, McCarthy MI, Beck S, Hitman GA.
PLoS One. 2010 Nov 18;5(11):e14040. doi: 10.1371/journal.pone.0014040.

An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications.
Champlot S, Berthelot C, Pruvost M, Bennett EA, Grange T, Geigl EM.
PLoS One. 2010 Sep 28;5(9). pii: e13042. doi: 10.1371/journal.pone.0013042.

Gene flow and species delimitation: a case study of two pine species with overlapping distributions in southeast China.
Zhou YF, Abbott RJ, Jiang ZY, Du FK, Milne RI, Liu JQ.
Evolution. 2010 Aug;64(8):2342-52. doi: 10.1111/j.1558-5646.2010.00988.x. Epub 2010 Mar 8.

A functional ABCA1 gene variant is associated with low HDL-cholesterol levels and shows evidence of positive selection in Native Americans.
Acuña-Alonzo V, Flores-Dorantes T, Kruit JK, Villarreal-Molina T, Arellano-Campos O, Hünemeier T, Moreno-Estrada A, Ortiz-López MG, Villamil-Ramírez H, León-Mimila P, Villalobos-Comparan M, Jacobo-Albavera L, Ramírez-Jiménez S, Sikora M, Zhang LH, Pape TD, Granados-Silvestre Mde A, Montufar-Robles I, Tito-Alvarez AM, Zurita-Salinas C, Bustos-Arriaga J, Cedillo-Barrón L, Gómez-Trejo C, Barquera-Lozano R, Vieira-Filho JP, Granados J, Romero-Hidalgo S, Huertas-Vázquez A, González-Martín A, Gorostiza A, Bonatto SL, Rodríguez-Cruz M, Wang L, Tusié-Luna T, Aguilar-Salinas CA, Lisker R, Moises RS, Menjivar M, Salzano FM, Knowler WC, Bortolini MC, Hayden MR, Baier LJ, Canizales-Quinteros S.
Hum Mol Genet. 2010 Jul 15;19(14):2877-85. doi: 10.1093/hmg/ddq173. Epub 2010 Apr 23.

Epidemic history and evolutionary dynamics of hepatitis B virus infection in two remote communities in rural Nigeria.
Forbi JC, Vaughan G, Purdy MA, Campo DS, Xia GL, Ganova-Raeva LM, Ramachandran S, Thai H, Khudyakov YE.
PLoS One. 2010 Jul 19;5(7):e11615. doi: 10.1371/journal.pone.0011615.

Human Y chromosome haplogroup R-V88: a paternal genetic record of early mid Holocene trans-Saharan connections and the spread of Chadic languages.
Cruciani F, Trombetta B, Sellitto D, Massaia A, Destro-Bisol G, Watson E, Beraud Colomb E, Dugoujon JM, Moral P, Scozzari R.
Eur J Hum Genet. 2010 Jul;18(7):800-7. doi: 10.1038/ejhg.2009.231. Epub 2010 Jan 6.

Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest.
Thomé MT, Zamudio KR, Giovanelli JG, Haddad CF, Baldissera FA Jr, Alexandrino J.
Mol Phylogenet Evol. 2010 Jun;55(3):1018-31. doi: 10.1016/j.ympev.2010.02.003. Epub 2010 Feb 6.

Conservation genetics of a rare Gerbil species: a comparison of the population genetic structures and demographic histories of the locally rare Pygmy Gerbil and the common Anderson's Gerbil.
Rotkopf R, Abramsky Z, Ovadia O.
BMC Ecol. 2010 Jun 2;10:15.

Elucidating the spread of the emerging canid nematode Angiostrongylus vasorum between Palaearctic and Nearctic ecozones.
Jefferies R, Shaw SE, Willesen J, Viney ME, Morgan ER.
Infect Genet Evol. 2010 May;10(4):561-8. doi: 10.1016/j.meegid.2010.01.013. Epub 2010 Feb 6.

Distinct variants at LIN28B influence growth in height from birth to adulthood.
Widén E, Ripatti S, Cousminer DL, Surakka I, Lappalainen T, Järvelin MR, Eriksson JG, Raitakari O, Salomaa V, Sovio U, Hartikainen AL, Pouta A, McCarthy MI, Osmond C, Kajantie E, Lehtimäki T, Viikari J, Kähönen M, Tyler-Smith C, Freimer N, Hirschhorn JN, Peltonen L, Palotie A.
Am J Hum Genet. 2010 May 14;86(5):773-82. doi: 10.1016/j.ajhg.2010.03.010. Epub 2010 Apr 15.

World phylogeography and male-mediated gene flow in the sandbar shark, Carcharhinus plumbeus.
Portnoy DS, McDowell JR, Heist EJ, Musick JA, Graves JE.
Mol Ecol. 2010 May;19(10):1994-2010. doi: 10.1111/j.1365-294X.2010.04626.x. Epub 2010 Apr 16.

Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times.
Elmer KR, Lehtonen TK, Kautt AF, Harrod C, Meyer A.
BMC Biol. 2010 May 12;8:60. doi: 10.1186/1741-7007-8-60.

Inferring genealogical processes from patterns of Bronze-Age and modern DNA variation in Sardinia.
Ghirotto S, Mona S, Benazzo A, Paparazzo F, Caramelli D, Barbujani G.
Mol Biol Evol. 2010 Apr;27(4):875-86. doi: 10.1093/molbev/msp292. Epub 2009 Dec 2.

Genomic landscape of positive natural selection in Northern European populations.
Lappalainen T, Salmela E, Andersen PM, Dahlman-Wright K, Sistonen P, Savontaus ML, Schreiber S, Lahermo P, Kere J.
Eur J Hum Genet. 2010 Apr;18(4):471-8.

Patterns of East Asian pig domestication, migration, and turnover revealed by modern and ancient DNA.
Larson G, Liu R, Zhao X, Yuan J, Fuller D, Barton L, Dobney K, Fan Q, Gu Z, Liu XH, Luo Y, Lv P, Andersson L, Li N.
Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7686-91. doi: 10.1073/pnas.0912264107. Epub 2010 Apr 19.

Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity?
Barshis DJ, Stillman JH, Gates RD, Toonen RJ, Smith LW, Birkeland C.
Mol Ecol. 2010 Apr;19(8):1705-20.

Evolutionary and functional properties of a two-locus beta-globin polymorphism in Indian house mice.
Runck AM, Weber RE, Fago A, Storz JF.
Genetics. 2010 Apr;184(4):1121-31.

Re-emergence of Chikungunya virus in South-east Asia: virological evidence from Sri Lanka and Singapore.
Hapuarachchi HC, Bandara KB, Sumanadasa SD, Hapugoda MD, Lai YL, Lee KS, Tan LK, Lin RT, Ng LF, Bucht G, Abeyewickreme W, Ng LC.
J Gen Virol. 2010 Apr;91(Pt 4):1067-76. doi: 10.1099/vir.0.015743-0. Epub 2009 Dec 2.

Origin and evolution of sulfadoxine resistant Plasmodium falciparum.
Vinayak S, Alam MT, Mixson-Hayden T, McCollum AM, Sem R, Shah NK, Lim P, Muth S, Rogers WO, Fandeur T, Barnwell JW, Escalante AA, Wongsrichanalai C, Ariey F, Meshnick SR, Udhayakumar V.
PLoS Pathog. 2010 Mar 26;6(3):e1000830. doi: 10.1371/journal.ppat.1000830.

Evidence of selective sweeps in genes conferring resistance to chloroquine and pyrimethamine in Plasmodium falciparum isolates in India.
Mixson-Hayden T, Jain V, McCollum AM, Poe A, Nagpal AC, Dash AP, Stiles JK, Udhayakumar V, Singh N.
Antimicrob Agents Chemother. 2010 Mar;54(3):997-1006.

Population genetics of ecological communities with DNA barcodes: an example from New Guinea Lepidoptera.
Craft KJ, Pauls SU, Darrow K, Miller SE, Hebert PD, Helgen LE, Novotny V, Weiblen GD.
Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5041-6. doi: 10.1073/pnas.0913084107. Epub 2010 Mar 2.

Genetic variability within the Oudri's fan-footed gecko Ptyodactylus oudrii in North Africa assessed using mitochondrial and nuclear DNA sequences.
Perera A, James Harris D.
Mol Phylogenet Evol. 2010 Feb;54(2):634-9. doi: 10.1016/j.ympev.2009.10.020. Epub 2009 Oct 19.

On the diversity of malaria parasites in African apes and the origin of Plasmodium falciparum from Bonobos.
Krief S, Escalante AA, Pacheco MA, Mugisha L, André C, Halbwax M, Fischer A, Krief JM, Kasenene JM, Crandfield M, Cornejo OE, Chavatte JM, Lin C, Letourneur F, Grüner AC, McCutchan TF, Rénia L, Snounou G.
PLoS Pathog. 2010 Feb 12;6(2):e1000765. doi: 10.1371/journal.ppat.1000765.

Pharmacogenetics of target genes across doxorubicin disposition pathway: a review.
Lal S, Mahajan A, Chen WN, Chowbay B.
Curr Drug Metab. 2010 Jan;11(1):115-28.

Phylogeography of Nasonia vitripennis (Hymenoptera) indicates a mitochondrial-Wolbachia sweep in North America.
Raychoudhury R, Grillenberger BK, Gadau J, Bijlsma R, van de Zande L, Werren JH, Beukeboom LW.
Heredity (Edinb). 2010 Mar;104(3):318-26. doi: 10.1038/hdy.2009.160. Epub 2010 Jan 20.

Out in the cold: genetic variation of Nothofagus pumilio (Nothofagaceae) provides evidence for latitudinally distinct evolutionary histories in austral South America.
Mathiasen P, Premoli AC.
Mol Ecol. 2010 Jan;19(2):371-85. doi: 10.1111/j.1365-294X.2009.04456.x. Epub 2009 Dec 3.

Zebu cattle are an exclusive legacy of the South Asia neolithic.
Chen S, Lin BZ, Baig M, Mitra B, Lopes RJ, Santos AM, Magee DA, Azevedo M, Tarroso P, Sasazaki S, Ostrowski S, Mahgoub O, Chaudhuri TK, Zhang YP, Costa V, Royo LJ, Goyache F, Luikart G, Boivin N, Fuller DQ, Mannen H, Bradley DG, Beja-Pereira A.
Mol Biol Evol. 2010 Jan;27(1):1-6. doi: 10.1093/molbev/msp213.

Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle.
Seabury CM, Seabury PM, Decker JE, Schnabel RD, Taylor JF, Womack JE.
Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):151-6. doi: 10.1073/pnas.0913006107. Epub 2009 Dec 14.

A predominantly neolithic origin for European paternal lineages.
Balaresque P, Bowden GR, Adams SM, Leung HY, King TE, Rosser ZH, Goodwin J, Moisan JP, Richard C, Millward A, Demaine AG, Barbujani G, Previderè C, Wilson IJ, Tyler-Smith C, Jobling MA.
PLoS Biol. 2010 Jan 19;8(1):e1000285.

2009 | Go to page top

Discordant distribution of populations and genetic variation in a sea star with high dispersal potential.
Keever CC, Sunday J, Puritz JB, Addison JA, Toonen RJ, Grosberg RK, Hart MW.
Evolution. 2009 Dec;63(12):3214-27.

Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila.
de Setta N, Van Sluys MA, Capy P, Carareto CM.
BMC Evol Biol. 2009 Dec 2;9:279.

Butkauskas D, Ragauskas A, Sruoga A, Lozys L, Tzeng WN.
Current Knowledge about European Eel Anguilla anguilla (L.) mtDNA D-loop Region Haplotypic Variety.
Acta Zoologica Lituanica. 2009;19(4). DOI:10.2478/v10043-009-0040-5

Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish priesthood.
Hammer MF, Behar DM, Karafet TM, Mendez FL, Hallmark B, Erez T, Zhivotovsky LA, Rosset S, Skorecki K.
Hum Genet. 2009 Aug 8.

Origin and status of the Great Lakes wolf.
Koblmüller S, Nord M, Wayne RK, Leonard JA.
Mol Ecol. 2009 Jun;18(11):2313-26.

Cardenas L, Castilla JC, Viard F.
A phylogeographical analysis across three biogeographical provinces of the south-eastern Pacific: the case of the marine gastropod Concholepas concholepas.
Journal of Biogeography. 2009 May;36:969–981.

Jezkova T, Jaeger JR, Marshall ZL, Riddle BR
Pleistocene Impacts on the Phylogeography of the Desert Pocket Mouse (Chaetodipus penicillatus).
Journal of Mammalogy. 2009 April;90(2):306-320.

Coelho M, Sequeira F, Luiselli D, Beleza S, Rocha J.
On the edge of Bantu expansions: mtDNA, Y chromosome and lactase persistence genetic variation in southwestern Angola.
BMC Evol Biol. 2009 Apr 21;9:80.

Hlaing T, Tun-Lin W, Somboon P, Socheat D, Setha T, Min S, Chang MS, Walton C.
Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies.
BMC Genet. 2009 Mar 6;10(1):11.

Anderson JD, Karel WJ.
A Genetic Assessment of Current Management Strategies for Spotted Seatrout in Texas
Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science. 2009 Jan;1:121-132.

Haas F, Pointer MA, Saino N, Brodin A, Mundy NI, Hansson B.
An analysis of population genetic differentiation and genotype-phenotype association across the hybrid zone of carrion and hooded crows using microsatellites and MC1R.
Mol Ecol. 2009 Jan;18(2):294-305.

2008 | Go to page top

Sandanaraj E, Lal S, Selvarajan V, Ooi LL, Wong ZW, Wong NS, Ang PC, Lee EJ, Chowbay B.
PXR pharmacogenetics: association of haplotypes with hepatic CYP3A4 and ABCB1 messenger RNA expression and doxorubicin clearance in Asian breast cancer patients.
Clin Cancer Res. 2008 Nov 1;14(21):7116-26.

Jin L, Su B.
Y chromosome evidence of earliest modern human settlement in East Asia and multiple origins of Tibetan and Japanese populations.
BMC Biol. 2008 Oct 29;6(1):45.

Ouyang C, Smith DD, Krontiris TG.
Evolutionary signatures of common human cis-regulatory haplotypes.
PLoS ONE. 2008;3(10):e3362. Epub 2008 Oct 10.

Matsuoka Y, Takumi S, Kawahara T.
Flowering time diversification and dispersal in central Eurasian wild wheat Aegilops tauschii Coss.: genealogical and ecological framework.
PLoS ONE. 2008 Sep 4;3(9):e3138.

Chaubey G, Karmin M, Metspalu E, Metspalu M, Selvi-Rani D, Singh VK, Parik J, Solnik A, Naidu BP, Kumar A, Adarsh N, Mallick CB, Trivedi B, Prakash S, Reddy R, Shukla P, Bhagat S, Verma S, Vasnik S, Khan I, Barwa A, Sahoo D, Sharma A, Rashid M, Chandra V, Reddy AG, Torroni A, Foley RA, Thangaraj K, Singh L, Kivisild T, Villems R.
Phylogeography of mtDNA haplogroup R7 in the Indian peninsula.
BMC Evol Biol. 2008 Aug 4;8(1):227.

Postglacial colonisation patterns and the role of isolation and expansion in driving diversification in a passerine bird.
Hansson B, Hasselquist D, Tarka M, Zehtindjiev P, Bensch S.
PLoS ONE. 2008 Jul 30;3(7):e2794.

Balaresque P, Parkin EJ, Roewer L, Carvalho-Silva DR, Mitchell RJ, van Oorschot RA, Henke J, Stoneking M, Nasidze I, Wetton J, de Knijff P, Tyler-Smith C, Jobling MA.
Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications.
Int J Legal Med. 2008 Jun 14.

Kanginakudru S, Metta M, Jakati RD, Nagaraju J.
Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken.
BMC Evol Biol. 2008 Jun 10;8(1):174.

Bargues MD, Klisiowicz DR, Gonzalez-Candelas F, Ramsey JM, Monroy C, Ponce C, Salazar-Schettino PM, Panzera F, Abad-Franch F, Sousa OE, Schofield CJ, Dujardin JP, Guhl F, Mas-Coma S.
Phylogeography and Genetic Variation of Triatoma dimidiata, the Main Chagas Disease Vector in Central America, and Its Position within the Genus Triatoma.
PLoS Negl Trop Dis. 2008 May 7;2(5):e233.

Orlando L, Male D, Alberdi MT, Prado JL, Prieto A, Cooper A, Hänni C.
Ancient DNA Clarifies the Evolutionary History of American Late Pleistocene Equids.
J Mol Evol. 2008 May;66(5):533-538.

Behar DM, Villems R, Soodyall H, Blue-Smith J, Pereira L, Metspalu E, Scozzari R, Makkan H, Tzur S, Comas D, Bertranpetit J, Quintana-Murci L, Tyler-Smith C, Spencer Wells R, Rosset S; The Genographic Consortium.
The Dawn of Human Matrilineal Diversity.
Am J Hum Genet. 2008 May;82(5):1-11.

Shlush LI, Behar DM, Yudkovsky G, Templeton A, Hadid Y, Basis F, Hammer M, Itzkovitz S, Skorecki K.
The Druze: a population genetic refugium of the Near East.
PLoS ONE. 2008 May 7;3(5):e2105.

Amaral AJ, Megens HJ, Crooijmans RP, Heuven HC, Groenen MA.
Linkage disequilibrium decay and haplotype block structure in the pig.
Genetics. 2008 May;179(1):569-79.

Behar DM, Metspalu E, Kivisild T, Rosset S, Tzur S, Hadid Y, Yudkovsky G, Rosengarten D, Pereira L, Amorim A, Kutuev I, Gurwitz D, Bonne-Tamir B, Villems R, Skorecki K.
Counting the founders: the matrilineal genetic ancestry of the Jewish Diaspora.
PLoS ONE. 2008 Apr 30;3(4):e2062.

Hollox EJ, Armour JA.
Directional and balancing selection in human beta-defensins.
BMC Evol Biol. 2008 Apr 16;8(1):113

Zalloua PA, Xue Y, Khalife J, Makhoul N, Debiane L, Platt DE, Royyuru AK, Herrera RJ, Hernanz DF, Blue-Smith J, Wells RS, Comas D, Bertranpetit J, Tyler-Smith C; The Genographic Consortium.
Y-Chromosomal Diversity in Lebanon Is Structured by Recent Historical Events.
Am J Hum Genet. 2008 Apr;82(4):873-82.

Fagundes NJ, Kanitz R, Eckert R, Valls AC, Bogo MR, Salzano FM, Smith DG, Silva WA Jr, Zago MA, Ribeiro-dos-Santos AK, Santos SE, Petzl-Erler ML, Bonatto SL.
Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas.
Am J Hum Genet. 2008 Mar;82(3):583-92.

Wu J, Ran P, Zhang B, Li Y, Yan J, Liao M, Hou Y, Zhang L.
Multiplex mutagenically separated polymerase chain reaction assay for rapid detection of human mitochondrial DNA variations in coding area.
Croat Med J. 2008 Feb;49(1):32-8.

Sabbagh A, Langaney A, Darlu P, Gerard N, Krishnamoorthy R, Poloni ES.
Worldwide distribution of NAT2 diversity: implications for NAT2 evolutionary history.
BMC Genet. 2008 Feb 27;9(1):21

Quintana-Murci L, Quach H, Harmant C, Luca F, Massonnet B, Patin E, Sica L, Mouguiama-Daouda P, Comas D, Tzur S, Balanovsky O, Kidd KK, Kidd JR, van der Veen L, Hombert JM, Gessain A, Verdu P, Froment A, Bahuchet S, Heyer E, Dausset J, Salas A, Behar DM.
Maternal traces of deep common ancestry and asymmetric gene flow between Pygmy hunter-gatherers and Bantu-speaking farmers.
Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1596-601

Enattah NS, Jensen TG, Nielsen M, Lewinski R, Kuokkanen M, Rasinpera H, El-Shanti H, Seo JK, Alifrangis M, Khalil IF, Natah A, Ali A, Natah S, Comas D, Mehdi SQ, Groop L, Vestergaard EM, Imtiaz F, Rashed MS, Meyer B, Troelsen J, Peltonen L.
Independent introduction of two lactase-persistence alleles into human populations reflects different history of adaptation to milk culture.
Am J Hum Genet. 2008 Jan;82(1):57-72.

2007 | Go to page top

Edh K, Widén B, Ceplitis A.
Nuclear and chloroplast microsatellites reveal extreme population differentiation and limited gene flow in the Aegean endemic Brassica cretica (Brassicaceae).
Mol Ecol. 2007 Dec;16(23):4972-83.

Magri D, Fineschi S, Bellarosa R, Buonamici A, Sebastiani F, Schirone B, Simeone MC, Vendramin GG.
The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean.
Mol Ecol. 2007 Nov 11;

Tishkoff SA, Gonder MK, Henn BM, Mortensen H, Knight A, Gignoux C, Fernandopulle N, Lema G, Nyambo TB, Ramakrishnan U, Reed FA, Mountain JL.
History of click-speaking populations of Africa inferred from mtDNA and Y chromosome genetic variation.
Mol Biol Evol. 2007 Oct;24(10):2180-95.

Enattah NS, Trudeau A, Pimenoff V, Maiuri L, Auricchio S, Greco L, Rossi M, Lentze M, Seo JK, Rahgozar S, Khalil I, Alifrangis M, Natah S, Groop L, Shaat N, Kozlov A, Verschubskaya G, Comas D, Bulayeva K, Mehdi SQ, Terwilliger JD, Sahi T, Savilahti E, Perola M, Sajantila A, Jarvela I, Peltonen L.
Evidence of still-ongoing convergence evolution of the lactase persistence T-13910 alleles in humans.
Am J Hum Genet. 2007 Sep;81(3):615-25.

Santos-Lopes SS, Pereira RW, Wilson IJ, Pena SD.
A worldwide phylogeography for the human X chromosome.
PLoS ONE. 2007 Jun 27;2(6):e557.

Devi SM, Ahmed I, Francalacci P, Hussain MA, Akhter Y, Alvi A, Sechi LA, Megraud F, Ahmed N.
Ancestral European roots of Helicobacter pylori in India.
BMC Genomics. 2007 Jun 20;8:184.

Bai RK, Leal SM, Covarrubias D, Liu A, Wong LJ.
Mitochondrial genetic background modifies breast cancer risk.
Cancer Res. 2007 May 15;67(10):4687-94.

Kidd JM, Newman TL, Tuzun E, Kaul R, Eichler EE.
Population stratification of a common APOBEC gene deletion polymorphism.
PLoS Genet. 2007 Apr 20;3(4):e63.

Peters JL, Omland KE
Population structure and mitochondrial polyphyly in North American gadwalls (Anas strepera)
The Auk April 2007;124(2):444-462

Shoji A, Yokoyama J, Kawata M
Molecular Phylogeny and Genetic Divergence of the Introduced Populations of Japanese Guppies, Poecilia reticulata
Conservation Genetics 2007;8(2):261-271

Besnard G, Rubio de Casas R, Vargas P
Plastid and nuclear DNA polymorphism reveals historical processes of isolation and reticulation in the olive tree complex (Olea europaea)
Journal of Biogeography April 2007;34(4):736-752

Parkin EJ, Kraayenbrink T, Opgenort JR, van Driem GL, Tuladhar NM, de Knijff P, Jobling MA.
Diversity of 26-locus Y-STR haplotypes in a Nepalese population sample: isolation and drift in the Himalayas.
Forensic Sci Int. 2007 Mar 2;166(2-3):176-81. Epub 2006 Jun 15.

Jobling MA, Lo IC, Turner DJ, Bowden GR, Lee AC, Xue Y, Carvalho-Silva D, Hurles ME, Adams SM, Chang YM, Kraaijenbrink T, Henke J, Guanti G, McKeown B, van Oorschot RA, Mitchell RJ, de Knijff P, Tyler-Smith C, Parkin EJ.
Structural variation on the short arm of the human Y chromosome: recurrent multigene deletions encompassing Amelogenin Y.
Hum Mol Genet. 2007 Feb 1;16(3):307-16.

Roostalu U, Kutuev I, Loogvali EL, Metspalu E, Tambets K, Reidla M, Khusnutdinova EK, Usanga E, Kivisild T, Villems R.
Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia: the Near Eastern and Caucasian perspective.
Mol Biol Evol. 2007 Feb;24(2):436-48.

King TE, Parkin EJ, Swinfield G, Cruciani F, Scozzari R, Rosa A, Lim SK, Xue Y, Tyler-Smith C, Jobling MA.
Africans in Yorkshire? The deepest-rooting clade of the Y phylogeny within an English genealogy.
Eur J Hum Genet. 2007 Jan 24

Ingman M, Gyllensten U.
A recent genetic link between Sami and the Volga-Ural region of Russia.
Eur J Hum Genet. 2007 Jan;15(1):115-20.

Thalmann O, Fischer A, Lankester F, Paabo S, Vigilant L.
The Complex Evolutionary History of Gorillas: Insights From Genomic Data.
Mol Biol Evol. 2007;24:146-158

Lorenz-Lemke AP, Mader G, Muschner VC, Stehmann JR, Bonatto SL, Salzano FM, Freitas LB.
Diversity and natural hybridization in a highly endemic species of Petunia (Solanaceae): a molecular and ecological analysis.
Mol Ecol. 2006 Dec;15(14):4487-97.

2006 | Go to page top

Yu DH, Jia X, CHU KH.
Common pearl oysters in China, Japan, and Australia are conspecific: evidence from ITS sequences and AFLP.
Fisheries Science 2006 Dec;72(6):1183-1190

Hinttala R, Smeets R, Moilanen JS, Ugalde C, Uusimaa J, Smeitink JA, Majamaa K.
Analysis of mitochondrial DNA sequences in patients with isolated or combined oxidative phosphorylation system deficiency.
J Med Genet. 2006 Nov;43(11):881-6.

Grazziotin FG, Monzel M, Echeverrigaray S, Bonatto SL.
Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest.
Mol Ecol. 2006 Nov;15(13):3969-82.

Kayser M, Brauer S, Cordaux R, Casto A, Lao O, Zhivotovsky LA, Moyse-Faurie C, Rutledge RB, Schiefenhoevel W, Gil D, Lin AA, Underhill PA, Oefner PJ, Trent RJ, Stoneking M.
Melanesian and Asian Origins of Polynesians: mtDNA and Y Chromosome Gradients Across the Pacific.
Mol Biol Evol. 2006 Nov;23(11):2234-44.

Fraumene C, Belle EM, Castri L, Sanna S, Mancosu G, Cosso M, Marras F, Barbujani G, Pirastu M, Angius A.
High Resolution Analysis and Phylogenetic Network Construction Using Complete mtDNA Sequences in Sardinian Genetic Isolates.
Mol Biol Evol. 2006 Nov;23(11):2101-11.

Meadows JRS, Hanotte O, Drögemüller C, Calvo J, Godfrey R, Coltman D, Maddox JF, Marzanov N, Kantanen J, Kijas JW
Globally dispersed Y chromosomal haplotypes in wild and domestic sheep
Anim Genet. 2006 Oct;37(5):444-53.

Sai K, Itoda M, Saito Y, Kurose K, Katori N, Kaniwa N, Komamura K, Kotake T, Morishita H, Tomoike H, Kamakura S, Kitakaze M, Tamura T, Yamamoto N, Kunitoh H, Yamada Y, Ohe Y, Shimada Y, Shirao K, Minami H, Ohtsu A, Yoshida T, Saijo N, Kamatani N, Ozawa S, Sawada J.
Genetic variations and haplotype structures of the ABCB1 gene in a Japanese population: an expanded haplotype block covering the distal promoter region, and associated ethnic differences.
Ann Hum Genet. 2006 Sep;70(Pt 5):605-22.

Guo S, Savolainen P, Su J, Zhang Q, Qi D, Zhou J, Zhong Y, Zhao X, Liu J.
Origin of mitochondrial DNA diversity of domestic yaks.
BMC Evol Biol. 2006 Sep 22;6:73.

Thanseem I, Thangaraj K, Chaubey G, Singh VK, Bhaskar LV, Reddy MB, Reddy AG, Singh L.
Genetic affinities among the lower castes and tribal groups of India: Inference from Y chromosome and mitochondrial DNA.
BMC Genet. 2006 Aug 7;7(1):42

Pires AE, Ouragh L, Kalboussi M, Matos J, Petrucci-Fonseca F, Bruford MW.
Mitochondrial DNA sequence variation in Portuguese native dog breeds: diversity and phylogenetic affinities.
J Hered. 2006 Jul-Aug;97(4):318-30.

Bosch E, Calafell F, Gonzalez-Neira A, Flaiz C, Mateu E, Scheil HG, Huckenbeck W, Efremovska L, Mikerezi I, Xirotiris N, Grasa C, Schmidt H, Comas D.
Paternal and maternal lineages in the Balkans show a homogeneous landscape over linguistic barriers, except for the isolated Aromuns.
Ann Hum Genet. 2006 Jul;70(Pt 4):459-87.

Ishikawa N, Yokoyama J, Ikeda H, Takabe E, Tsukaya H.
Evaluation of morphological and molecular variation in Plantago asiatica var. densiuscula, with special reference to the systematic treatment of Plantago asiatica var. yakusimensis.
J Plant Res. 2006 Jul;119(4):385-95.

Xue Y, Daly A, Yngvadottir B, Liu M, Coop G, Kim Y, Sabeti P, Chen Y, Stalker J, Huckle E, Burton J, Leonard S, Rogers J, Tyler-Smith C.
Spread of an inactive form of caspase-12 in humans is due to recent positive selection.
Am J Hum Genet. 2006 Apr;78(4):659-70.

Marmi J, Lopez-Giraldez F, Macdonald DW, Calafell F, Zholnerovskaya E, Domingo-Roura X.
Mitochondrial DNA reveals a strong phylogeographic structure in the badger across Eurasia.
Mol Ecol. 2006 Apr;15(4):1007-20.

Luis C, Bastos-Silveira C, Cothran EG, Oom Mdo M.
Iberian origins of New World horse breeds.
J Hered. 2006 Mar-Apr;97(2):107-13.

de Freitas JM, Augusto-Pinto L, Pimenta JR, Bastos-Rodrigues L, Gonçalves VF, Teixeira SMR, Chiari E, Junqueira ACV, Fernandes O, Macedo AM, Machado CR, Pena SDJ.
Ancestral Genomes, Sex, and the Population Structure of Trypanosoma cruzi
PLoS Pathog 2(3): e24 2006 Mar

Behar DM, Metspalu E, Kivisild T, Achilli A, Hadid Y, Tzur S, Pereira L, Amorim A, Quintana-Murci L, Majamaa K, Herrnstadt C, Howell N, Balanovsky O, Kutuev I, Pshenichnov A, Gurwitz D, Bonne-Tamir B, Torroni A, Villems R, Skorecki K.
The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event.
Am J Hum Genet. 2006 Mar;78(3):487-97.

Moore LT, McEvoy B, Cape E, Simms K, Bradley DG.
A y-chromosome signature of hegemony in gaelic ireland.
Am J Hum Genet. 2006 Feb;78(2):334-8.

Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, Chow CE, Lin AA, Mitra M, Sil SK, Ramesh A, Usha Rani MV, Thakur CM, Cavalli-Sforza LL, Majumder PP, Underhill PA.
Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of central asian pastoralists.
Am J Hum Genet. 2006 Feb;78(2):202-21.

Grobler PJ, Jones JW, Johnson NA, Beaty B, Struthers J, Neves RJ, Hallerman EM.
Patterns of genetic differentiation and conservation of the slabside pearlymussel, Lexingtonia Dolabelloides (Lea, 1840) in the Tennesse river drainage
Journal of Molluscan Studies 2006 Feb;72(1):65-75

Lai SJ, Liu YP, Liu YX, Li XW, Yao YG.
Genetic diversity and origin of Chinese cattle revealed by mtDNA D-loop sequence variation.
Mol Phylogenet Evol. 2006 Jan;38(1):146-54.

Lee HY, Yoo JE, Park MJ, Chung U, Shin KJ.
Mitochondrial DNA control region sequences in Koreans: identification of useful variable sites and phylogenetic analysis for mtDNA data quality control
Int J Legal Med. 2006 Jan;120(1):5-14.

Bowden R, Sakaoka H, Ward R, Donnelly P.
Patterns of Eurasian HSV-1 molecular diversity and inferences of human migrations.
Infect Genet Evol. 2006 Jan;6(1):63-74.

Wootton PT, Drenos F, Cooper JA, Thompson SR, Stephens JW, Hurt-Camejo E, Wiklund O, Humphries SE, Talmud PJ.
Tagging-SNP haplotype analysis of the secretory PLA2IIa gene PLA2G2A shows strong association with serum levels of sPLA2IIa: results from the UDACS study.
Hum Mol Genet. 2006 Jan 15;15(2):355-61.

Soejima M, Tachida H, Ishida T, Sano A, Koda Y.
Evidence for recent positive selection at the human AIM1 locus in a European population.
Mol Biol Evol. 2006 Jan;23(1):179-88.

2005 | Go to page top

Xue Y, Zerjal T, Bao W, Zhu S, Lim SK, Shu Q, Xu J, Du R, Fu S, Li P, Yang H, Tyler-Smith C.
Recent spread of a Y-chromosomal lineage in northern China and Mongolia.
Am J Hum Genet. 2005 Dec;77(6):1112-6.

Royo LJ, Alvarez I, Beja-Pereira A, Molina A, Fernandez I, Jordana J, Gomez E, Gutierrez JP, Goyache F.
The origins of Iberian horses assessed via mitochondrial DNA.
J Hered. 2005 Nov-Dec;96(6):663-9.

Tan Z, Shon AM, Ober C.
Evidence of balancing selection at the HLA-G promoter region.
Hum Mol Genet. 2005 Dec 1;14(23):3619-28.

Gotherstrom A, Anderung C, Hellborg L, Elburg R, Smith C, Bradley DG, Ellegren H.
Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe.
Proc Biol Sci. 2005 Nov 22;272(1579):2345-50.

Eduardo Palma R, Marquet PA, Boric-Bargetto D
Inter- and intraspecific phylogeography of small mammals in the Atacama Desert and adjacent areas of northern Chile
Journal of Biogeography 2005 Nov;32(11):1931-42

Pedrosa S, Uzun M, Arranz JJ, Gutierrez-Gil B, San Primitivo F, Bayon Y.
Evidence of three maternal lineages in Near Eastern sheep supporting multiple domestication events.
Proc Biol Sci. 2005 Oct 22;272(1577):2211-7.

Shi H, Dong YL, Wen B, Xiao CJ, Underhill PA, Shen PD, Chakraborty R, Jin L, Su B.
Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122.
Am J Hum Genet. 2005 Sep;77(3):408-19.

Sanchez JJ, Hallenberg C, Borsting C, Hernandez A, Morling N.
High frequencies of Y chromosome lineages characterized by E3b1, DYS19-11, DYS392-12 in Somali males.
Eur J Hum Genet. 2005 Jul;13(7):856-66 .

Han K, Sen SK, Wang J, Callinan PA, Lee J, Cordaux R, Liang P, Batzer MA.
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.
Nucleic Acids Res. 2005 Jul 20;33(13):4040-52.

van Asch B, Pereira L, Pereira F, Santa-Rita P, Lima M, Amorim A.
MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation.
BMC Genet. 2005 Jun 22;6(1):37.

Natoli A, Birkun A, Aguilar A, Lopez A, Hoelzel AR.
Habitat structure and the dispersal of male and female bottlenose dolphins (Tursiops truncatus).
Proc Biol Sci. 2005 Jun 22;272(1569):1217-26.

Anderung C, Bouwman A, Persson P, Carretero JM, Ortega AI, Elburg R, Smith C, Arsuaga JL, Ellegren H, Gotherstrom A.
Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle.
Proc Natl Acad Sci U S A. 2005 Jun 14;102(24):8431-5.

Han K, Xing J, Wang H, Hedges DJ, Garber RK, Cordaux R, Batzer MA.
Under the genomic radar: the stealth model of Alu amplification.
Genome Res. 2005 May;15(5):655-64.

Lin L, Prassolov A, Funk A, Quinn L, Hohenberg H, Frolich K, Newbold J, Ludwig A, Will H, Sirma H, Steinbach F.
Evidence from nature: interspecies spread of heron hepatitis B viruses.
J Gen Virol. 2005 May;86(Pt 5):1335-42.

Voisin M, Engel CR, Viard F.
Differential shuffling of native genetic diversity across introduced regions in a brown alga: aquaculture vs. maritime traffic effects.
Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5432-7.

Neumann K, Michaux JR, Maak S, Jansman HA, Kayser A, Mundt G, Gattermann R.
Genetic spatial structure of European common hamsters (Cricetus cricetus)--a result of repeated range expansion and demographic bottlenecks.
Mol Ecol. 2005 Apr;14(5):1473-83.

Lorenz-Lemke AP, Muschner VC, Bonatto SL, Cervi AC, Salzano FM, Freitas LB.
Phylogeographic inferences concerning evolution of Brazilian Passiflora actinia and P. elegans (Passifloraceae) based on ITS (nrDNA) variation.
Ann Bot (Lond). 2005 Apr;95(5):799-806.

2004 | Go to page top

Achilli A, Rengo C, Magri C, Battaglia V, Olivieri A, Scozzari R, Cruciani F, Zeviani M, Briem E, Carelli V, Moral P, Dugoujon JM, Roostalu U, Loogvali EL, Kivisild T, Bandelt HJ, Richards M, Villems R, Santachiara-Benerecetti AS, Semino O, Torroni A.
The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool.
Am J Hum Genet. 2004 Nov;75(5):910-8.

Loogvali EL, Roostalu U, Malyarchuk BA, Derenko MV, Kivisild T, Metspalu E, Tambets K, Reidla M, Tolk HV, Parik J, Pennarun E, Laos S, Lunkina A, Golubenko M, Barac L, Pericic M, Balanovsky OP, Gusar V, Khusnutdinova EK, Stepanov V, Puzyrev V, Rudan P, Balanovska EV, Grechanina E, Richard C, Moisan JP, Chaventre A, Anagnou NP, Pappa KI, Michalodimitrakis EN, Claustres M, Golge M, Mikerezi I, Usanga E, Villems R.
Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia.
Mol Biol Evol. 2004 Nov;21(11):2012-21.

Tanaka M, Cabrera VM, Gonzalez AM, Larruga JM, Takeyasu T, Fuku N, Guo LJ, Hirose R, Fujita Y, Kurata M, Shinoda K, Umetsu K, Yamada Y, Oshida Y, Sato Y, Hattori N, Mizuno Y, Arai Y, Hirose N, Ohta S, Ogawa O, Tanaka Y, Kawamori R, Shamoto-Nagai M, Maruyama W, Shimokata H, Suzuki R, Shimodaira H.
Mitochondrial genome variation in eastern Asia and the peopling of Japan.
Genome Res. 2004 Oct;14(10A):1832-50.

Howell N, Elson JL, Turnbull DM, Herrnstadt C.
African Haplogroup L mtDNA sequences show violations of clock-like evolution.
Mol Biol Evol. 2004 Oct;21(10):1843-54.

Metspalu M, Kivisild T, Metspalu E, Parik J, Hudjashov G, Kaldma K, Serk P, Karmin M, Behar DM, Gilbert MT, Endicott P, Mastana S, Papiha SS, Skorecki K, Torroni A, Villems R.
Most of the extant mtDNA boundaries in south and southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans.
BMC Genet. 2004 Aug 31;5:26.

Arredi B, Poloni ES, Paracchini S, Zerjal T, Fathallah DM, Makrelouf M, Pascali VL, Novelletto A, Tyler-Smith C.
A predominantly neolithic origin for Y-chromosomal DNA variation in North Africa.
Am J Hum Genet. 2004 Aug;75(2):338-45.

Verkaar EL, Nijman IJ, Beeke M, Hanekamp E, Lenstra JA.
Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin?
Mol Biol Evol. 2004 Jul;21(7):1165-70.

Mas C, Taske N, Deutsch S, Guipponi M, Thomas P, Covanis A, Friis M, Kjeldsen MJ, Pizzolato GP, Villemure JG, Buresi C, Rees M, Malafosse A, Gardiner M, Antonarakis SE, Meda P.
Association of the connexin36 gene with juvenile myoclonic epilepsy.
J Med Genet. 2004 Jul;41(7):e93.

Rootsi S, Magri C, Kivisild T, Benuzzi G, Help H, Bermisheva M, Kutuev I, Barac L, Pericic M, Balanovsky O, Pshenichnov A, Dion D, Grobei M, Zhivotovsky LA, Battaglia V, Achilli A, Al-Zahery N, Parik J, King R, Cinnioglu C, Khusnutdinova E, Rudan P, Balanovska E, Scheffrahn W, Simonescu M, Brehm A, Goncalves R, Rosa A, Moisan JP, Chaventre A, Ferak V, Furedi S, Oefner PJ, Shen P, Beckman L, Mikerezi I, Terzic R, Primorac D, Cambon-Thomsen A, Krumina A, Torroni A, Underhill PA, Santachiara-Benerecetti AS, Villems R, Semino O.
Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in europe.
Am J Hum Genet. 2004 Jul;75(1):128-37.

Semino O, Magri C, Benuzzi G, Lin AA, Al-Zahery N, Battaglia V, Maccioni L, Triantaphyllidis C, Shen P, Oefner PJ, Zhivotovsky LA, King R, Torroni A, Cavalli-Sforza LL, Underhill PA, Santachiara-Benerecetti AS.
Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area.
Am J Hum Genet. 2004 May;74(5):1023-34.

Quintana-Murci L, Chaix R, Wells RS, Behar DM, Sayar H, Scozzari R, Rengo C, Al-Zahery N, Semino O, Santachiara-Benerecetti AS, Coppa A, Ayub Q, Mohyuddin A, Tyler-Smith C, Qasim Mehdi S, Torroni A, McElreavey K.
Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor.
Am J Hum Genet. 2004 May;74(5):827-45.

Liebers D, de Knijff P, Helbig AJ.
The herring gull complex is not a ring species.
Proc Biol Sci. 2004 May 7;271(1542):893-901.

Tambets K, Rootsi S, Kivisild T, Help H, Serk P, Loogvali EL, Tolk HV, Reidla M, Metspalu E, Pliss L, Balanovsky O, Pshenichnov A, Balanovska E, Gubina M, Zhadanov S, Osipova L, Damba L, Voevoda M, Kutuev I, Bermisheva M, Khusnutdinova E, Gusar V, Grechanina E, Parik J, Pennarun E, Richard C, Chaventre A, Moisan JP, Barac L, Pericic M, Rudan P, Terzic R, Mikerezi I, Krumina A, Baumanis V, Koziel S, Rickards O, De Stefano GF, Anagnou N, Pappa KI, Michalodimitrakis E, Ferak V, Furedi S, Komel R, Beckman L, Villems R.
The western and eastern roots of the Saami--the story of genetic "outliers" told by mitochondrial DNA and Y chromosomes.
Am J Hum Genet. 2004 Apr;74(4):661-82.

Salas A, Richards M, Lareu MV, Scozzari R, Coppa A, Torroni A, Macaulay V, Carracedo A.
The African diaspora: mitochondrial DNA and the Atlantic slave trade.
Am J Hum Genet. 2004 Mar;74(3):454-65.

Duchene V, Ferdinand S, Filliol I, Guegan JF, Rastogi N, Sola C.
Phylogenetic reconstruction of Mycobacterium tuberculosis within four settings of the Caribbean region: tree
comparative analyse and first appraisal on their phylogeography.
Infect Genet Evol. 2004 Mar;4(1):5-14.

Joshi MB, Rout PK, Mandal AK, Tyler-Smith C, Singh L, Thangaraj K.
Phylogeography and origin of Indian domestic goats.
Mol Biol Evol. 2004 Mar;21(3):454-62.

Ricaut FX, Keyser-Tracqui C, Bourgeois J, Crubezy E, Ludes B.
Genetic analysis of a Scytho-Siberian skeleton and its implications for ancient Central Asian migrations.
Hum Biol. 2004 Feb;76(1):109-25.

Zhou G, Zhai Y, Dong X, Zhang X, He F, Zhou K, Zhu Y, Wei H, Yao Z, Zhong S, Shen Y, Qiang B, He F.
Haplotype Structure and Evidence for Positive Selection at the Human IL13 Locus
Mol. Biol. Evol. 21(1):29-36. 2004

Trovoada MJ, Pereira L, Gusmao L, Abade A, Amorim A, Prata MJ.
Pattern of mtDNA variation in three populations from Sao Tome e Principe.
Ann Hum Genet. 2004 Jan;68(Pt 1):40-54.

2003 | Go to page top

Reidla M, Kivisild T, Metspalu E, Kaldma K, Tambets K, Tolk HV, Parik J, Loogvali EL, Derenko M, Malyarchuk B, Bermisheva M, Zhadanov S, Pennarun E, Gubina M, Golubenko M, Damba L, Fedorova S, Gusar V, Grechanina E, Mikerezi I, Moisan JP, Chaventre A, Khusnutdinova E, Osipova L, Stepanov V, Voevoda M, Achilli A, Rengo C, Rickards O, De Stefano GF, Papiha S, Beckman L, Janicijevic B, Rudan P, Anagnou N, Michalodimitrakis E, Koziel S, Usanga E, Geberhiwot T, Herrnstadt C, Howell N, Torroni A, Villems R.
Origin and diffusion of mtDNA haplogroup X.
Am J Hum Genet. 2003 Nov;73(5):1178-90.

Basu A, Mukherjee N, Roy S, Sengupta S, Banerjee S, Chakraborty M, Dey B, Roy M, Roy B, Bhattacharyya NP, Roychoudhury S, Majumder PP.
Ethnic India: a genomic view, with special reference to peopling and structure.
Genome Res. 2003 Oct;13(10):2277-90.

Stead JD, Hurles ME, Jeffreys AJ.
Global haplotype diversity in the human insulin gene region.
Genome Res. 2003 Sep;13(9):2101-11.

Moilanen JS, Majamaa K.
Phylogenetic network and physicochemical properties of nonsynonymous mutations in the protein-coding genes of human mitochondrial DNA.
Mol Biol Evol. 2003 Aug;20(8):1195-210.

Herrnstadt C, Preston G, Howell N.
Errors, phantoms and otherwise, in human mtDNA sequences.
Am J Hum Genet. 2003 Jun;72(6):1585-6.

Knight A, Underhill PA, Mortensen HM, Zhivotovsky LA, Lin AA, Henn BM, Louis D, Ruhlen M, Mountain JL.
African Y chromosome and mtDNA divergence provides insight into the history of click languages.
Curr Biol. 2003 Mar 18;13(6):464-73. Erratum in: Curr Biol. 2003 Apr 15;13(8):705.

Kivisild T, Rootsi S, Metspalu M, Mastana S, Kaldma K, Parik J, Metspalu E, Adojaan M, Tolk HV, Stepanov V, Golge M, Usanga E, Papiha SS, Cinnioglu C, King R, Cavalli-Sforza L, Underhill PA, Villems R.
The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations.
Am J Hum Genet. 2003 Feb;72(2):313-32.

Kayser M, Brauer S, Weiss G, Schiefenhovel W, Underhill P, Shen P, Oefner P, Tommaseo-Ponzetta M, Stoneking M.
Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea.
Am J Hum Genet. 2003 Feb;72(2):281-302.

2002 | Go to page top

Salas A, Richards M, De la Fe T, Lareu MV, Sobrino B, Sanchez-Diz P, Macaulay V, Carracedo A.
The making of the African mtDNA landscape.
Am J Hum Genet. 2002 Nov;71(5):1082-111.

Liebers D, Helbig AJ
Phylogeography and colonization history of Lesser Black-backed Gulls (Larus fuscus) as revealed by mtDNA sequences.
Journal of Evolutionary Biology. 2002 Nov;15(6):1021-1033

Stadler T, Delph LF.
Ancient mitochondrial haplotypes and evidence for intragenic recombination in a gynodioecious plant.
Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11730-5.

Zerjal T, Wells RS, Yuldasheva N, Ruzibakiev R, Tyler-Smith C.
A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia.
Am J Hum Genet. 2002 Sep;71(3):466-82.

Toomajian C, Kreitman M.
Sequence variation and haplotype structure at the human HFE locus.
Genetics. 2002 Aug;161(4):1609-23.

Cruciani F, Santolamazza P, Shen P, Macaulay V, Moral P, Olckers A, Modiano D, Holmes S, Destro-Bisol G, Coia V, Wallace DC, Oefner PJ, Torroni A, Cavalli-Sforza LL, Scozzari R, Underhill PA.
A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes.
Am J Hum Genet. 2002 May;70(5):1197-214.

Herrnstadt C, Elson JL, Fahy E, Preston G, Turnbull DM, Anderson C, Ghosh SS, Olefsky JM, Beal MF, Davis RE, Howell N.
Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups.
Am J Hum Genet. 2002 May;70(5):1152-71. Erratum in: Am J Hum Genet 2002 Aug;71(2):448-9.

Qamar R, Ayub Q, Mohyuddin A, Helgason A, Mazhar K, Mansoor A, Zerjal T, Tyler-Smith C, Mehdi SQ.
Y-chromosomal DNA variation in Pakistan.
Am J Hum Genet. 2002 May;70(5):1107-24.

Malhi RS, Eshleman JA, Greenberg JA, Weiss DA, Schultz Shook BA, Kaestle FA, Lorenz JG, Kemp BM, Johnson JR, Smith DG.
The structure of diversity within New World mitochondrial DNA haplogroups: implications for the prehistory of North America.
Am J Hum Genet. 2002 Apr;70(4):905-19. Epub 2002 Feb 13. Erratum in: Am J Hum Genet 2002 Jul;71(1):215.

Shimada MK, Terao K, Shotake T.
Mitochondrial sequence diversity within a subspecies of savanna monkeys (Cercopithecus aethiops) is similar to that between subspecies.
J Hered. 2002 Jan-Feb;93(1):9-18.

2001 | Go to page top

Gresham D, Morar B, Underhill PA, Passarino G, Lin AA, Wise C, Angelicheva D, Calafell F, Oefner PJ, Shen P, Tournev I, de Pablo R, Kucinskas V, Perez-Lezaun A, Marushiakova E, Popov V, Kalaydjieva L.
Origins and divergence of the Roma (gypsies).
Am J Hum Genet. 2001 Dec;69(6):1314-31.

Nebel A, Filon D, Brinkmann B, Majumder PP, Faerman M, Oppenheim A.
The Y chromosome pool of Jews as part of the genetic landscape of the Middle East.
Am J Hum Genet. 2001 Nov;69(5):1095-112.

Torroni A, Bandelt HJ, Macaulay V, Richards M, Cruciani F, Rengo C, Martinez-Cabrera V, Villems R, Kivisild T, Metspalu E, Parik J, Tolk HV, Tambets K, Forster P, Karger B, Francalacci P, Rudan P, Janicijevic B, Rickards O, Savontaus ML, Huoponen K, Laitinen V, Koivumaki S, Sykes B, Hickey E, Novelletto A, Moral P, Sellitto D, Coppa A, Al-Zaheri N, Santachiara-Benerecetti AS, Semino O, Scozzari R.
A signal, from human mtDNA, of postglacial recolonization in Europe.
Am J Hum Genet. 2001 Oct;69(4):844-52.

Hull J, Ackerman H, Isles K, Usen S, Pinder M, Thomson A, Kwiatkowski D.
Unusual haplotypic structure of IL8, a susceptibility locus for a common respiratory virus.
Am J Hum Genet. 2001 Aug;69(2):413-9.

Finnilä S, Lehtonen MS, Majamaa K.
Phylogenetic network for European mtDNA.
Am J Hum Genet. 2001 Jun;68(6):1475-84.

Bosch E, Calafell F, Comas D, Oefner PJ, Underhill PA, Bertranpetit J.
High-resolution analysis of human Y-chromosome variation shows a sharp discontinuity and limited gene flow between northwestern Africa and the Iberian Peninsula.
Am J Hum Genet. 2001 Apr;68(4):1019-29.

Adcock GJ, Dennis ES, Easteal S, Huttley GA, Jermiin LS, Peacock WJ, Thorne A.
Mitochondrial DNA sequences in ancient Australians: Implications for modern human origins.
Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):537-42.

Maca-Meyer N, Gonzalez AM, Larruga JM, Flores C, Cabrera VM.
Major genomic mitochondrial lineages delineate early human expansions.
BMC Genet. 2001;2:13.

Kayser M, Brauer S, Weiss G, Schiefenhovel W, Underhill PA, Stoneking M.
Independent histories of human Y chromosomes from Melanesia and Australia.
Am J Hum Genet. 2001 Jan;68(1):173-190.

2000 | Go to page top

Fullerton SM, Clark AG, Weiss KM, Nickerson DA, Taylor SL, Stengard JH, Salomaa V, Vartiainen E, Perola M, Boerwinkle E, Sing CF.
Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism.
Am J Hum Genet. 2000 Oct;67(4):881-900.

Helgason A, Sigureth ardottir S, Nicholson J, Sykes B, Hill EW, Bradley DG, Bosnes V, Gulcher JR, Ward R, Stefansson K.
Estimating Scandinavian and Gaelic ancestry in the male settlers of Iceland.
Am J Hum Genet. 2000 Sep;67(3):697-717.